Biological Diversity and Ecological Forecasting Data Pathfinder

NASA Earth science data are vital components of investigations into biological diversity, species distribution, and ecological forecasting.
Biological Diversity and Ecological Forecasting Campaign logo , which contains images of a wolf, a leaf, a bird and aquatic vegetation

An ecological data revolution is underway. Ecologists have gained unprecedented insights into Earth’s many biological systems, from determining populations of species to tracking and observing interactions between ecological communities to using DNA from the environment (eDNA) to identify invasive or rare species. This revolution is driven by the integration and harmonization of multiple data sources at multiple spatial scales.

Traditional field observations provide data on organisms and their environment at the local level. NASA satellite-based remote sensing data complement field data with environmental variables, such as temperature and precipitation, and vegetation data, such as canopy height and evapotranspiration.

The Biological Diversity and Ecological Forecasting Data Pathfinder is divided into four parts, each of which contains data that provide information to assess Essential Biodiversity Variables and Sustainable Development Goals. Click on the links below to find data specific to the section:

New to using NASA Earth science data? This pathfinder is designed to help guide you through the process of selecting and using applicable datasets, with guidance on resolutions and direct links to the data sources. After getting started here, there are numerous NASA resources that can help develop your skills further. If you are new to remote sensing, check out What is Remote Sensing? or view NASA's Applied Remote Sensing Training on Fundamentals of Remote Sensing.

Please visit the Earthdata Forum, where you can interact with other users and NASA subject matter experts on a variety of Earth science research and applications topics.

About the Data

NASA collaborates with other federal entities and international space organizations, including NOAA, USGS, the Japan Aerospace Exploration Agency (JAXA) and Ministry of Economy, Trade, and Industry (METI), and the European Space Agency (ESA), to provide data used in understanding a number of biological phenomena, including vegetation characteristics and change, biodiversity, the impacts of human activities on the natural environment, and habitat suitability. Some of these phenomena can be detected directly through remote Earth observation. For instance, forest loss can be tracked by comparing satellite imagery across time, and the distribution of ecosystems and species can directly be detected by the color signatures that characterize them. Species-specific detection is challenging with multispectral data due to the coarse spatial resolution; however, with hyperspectral data (having a high spectral resolution), the unique spectral fingerprint each species has can provide species-specific information for vegetation mapping and individual species identification.

Other biological phenomena are detected indirectly through models, which often use remotely sensed and ground-based observations of environmental variables as inputs. For example, species distribution or movement can be modeled by comparing known occurrence locations or movement records to the surrounding physical characteristics of the landscape. These analyses can help forecast where species are likely to be distributed in the future.

NASA’s Earth science data products are validated, meaning their accuracy has been assessed and verified over a widely distributed set of locations and time periods via several ground-truth and validation efforts. These data are freely and openly available to all users.

Datasets referenced in this pathfinder are from sensors shown in the table below. Some of these datasets are available through NASA's Land, Atmosphere Near real-time Capability for Earth observing systems (LANCE). LANCE provides data to the public within three hours of satellite overpass, which allows for near real-time (NRT) monitoring and decision making. If latency is not a primary concern, users are encouraged to use the standard science products, which are created using the best available ancillary, calibration, and ephemeris information.

Platform/Satellite

Sensor

Spatial Resolution

Temporal Resolution

Measurement

International Space Station
Note: data are available in areas of 51.6° S to 51.6° N
Global Ecosystem Dynamics Investigation (GEDI) 25 m diameter, 1 km grid NA Canopy Height, Vertical Canopy Structure, Surface Elevation
Space Shuttle Shuttle Radar Topography Mission (SRTM) 30 m, 90 m Static Elevation
JAXA and METI Advanced Land Observing Satellite-1 (ALOS) Phased Array type L-band Synthetic Aperture Radar (PALSAR) 10 m, 100 m   Forest Structure
ESA Sentinel-1 Synthetic Aperture Radar (SAR) 25 x 40 m, 5 x 5 m, and 5 x 20 m 12 days (using together 6 days) Forest Structure
Uninhabited Aerial Vehicle
Note: data are available over specific areas
Synthetic Aperture Radar (UAVSAR) 1.8 m Non-cyclic Forest Structure
International Space Station
Note: data are available in areas of 51.6° S to 51.6° N
Ecosystem Spaceborne Thermal Radiometer Experiment on Space Station (ECOSTRESS) 70 m ~ 1-7 days Land Surface Temperature, Evapotranspiration, Evaporative Stress Index, Water Use Efficiency
Terra Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) 15 m, 30 m, 90 m Variable Land Surface Temperature, Surface Reflectance, Elevation
Terra and Aqua Moderate Resolution Imaging Spectroradiometer (MODIS) * 250 m, 500 m, 1000 m, 5600 m 1-2 days Land Surface Temperature, Surface Reflectance, Vegetation Indices, Leaf Area Index/Fraction of Photosynthetically Active Radiation, Gross/Net Primary Productivity, Evapotranspiration, Land Cover Dynamics, Vegetation Continuous Fields, Sea Surface Temperature
Airborne
Note: data are available over specific areas
Airborne Visible InfraRed Imaging Spectrometer (AVIRIS)
AVIRIS - Next Generation (AVIRIS-NG)
Varies, but typically 3-20 m Variable or N/A Leaf Surface Indices
Global Change Observation Mission 1st - Water (GCOM-W1) Advanced Microwave Scanning Radiometer 2 (AMSR2) * Precipitation Rate: imagery resolution is 2 km, sensor resolution is 5 km
Soil Water Equivalent (SWE): 25 km
Precipitation rate: daily
SWE: daily, 5-day, monthly
Precipitation
Integrated multi-satellite data Tropical Rainfall Measuring Mission (TRMM) Multi-satellite Precipitation Algorithm (TMPA)
Integrated Multi-satellitE Retrievals for Global Precipitation Measurement (GPM) (IMERG)
0.1° x 0.1° or 0.25° x 0.25° half-hourly, daily, monthly Precipitation
Soil Moisture Active Passive (SMAP) Radar (active) - no longer functional
Microwave radiometer (passive)
9 km, 36 km 1 day Soil Moisture, Sea Surface Salinity
Earth Observing-1 (EO-1) Hyperion 30 m Variable Spectroscopy
Uninhabited Aerial Vehicle Portable Remote Imaging SpectroMeter (PRISM) ~30 cm Variable Spectroscopy
NASA/USGS Landsat 8 Operational Land Imager (OLI)
Thermal Infrared Sensor (TIRS)
15, 30, 60 m 16 days Surface Reflectance
NASA/NOAA Suomi National Polar-orbiting Partnership (Suomi NPP) Visible Infrared Imaging Radiometer Suite (VIIRS) * 500 m, 1000 m, 5600 m daily Surface Reflectance, Land Surface Temperature, Vegetation Indices, Nighttime Imagery, Sea Surface Temperature
Ice, Cloud and land Elevation Satellite-2 (ICESat-2) Advanced Topographic Laser Altimeter System (ATLAS) 3 m accuracy at 1 km spatial resolution 91 days Vegetation Height
Note: this is not an exhaustive list but rather only includes datasets with NASA's Earth Observing System Data and Information System (EOSDIS)

In addition to mission data, NASA has a series of models that use satellite- and ground-based observational data to produce high-quality fields of land surface states and fluxes. The Modern-Era Retrospective analysis for Research and Applications version 2 (MERRA-2) is a NASA atmospheric reanalysis that uses Goddard Earth Observing System Model, Version 5 (GEOS-5) with its Atmospheric Data Assimilation System (ADAS). The MERRA project focuses on historical climate analyses for a broad range of weather and climate time scales and places the NASA suite of observations in a climate context.

Model Source

Data Parameter

Spatial Resolution

Temporal Resolution

Modern-Era Retrospective analysis for Research and Applications version 2 (MERRA-2) Emissivity, Evaporation, Humidity, Leaf Area Index, Precipitation Rate, Runoff, Temperature, Snow Cover, Soil Moisture, Soil Temperature, etc. 0.5° x 0.625° Diurnal, monthly
Use the Data
Image
Ecological variables can be measured using multiscale remote sensing, modeling, and advanced analytical techniques. The type of instrument (active versus passive) and whether it operates in the visible, infrared, thermal infrared, and microwave portions of the electromagnetic spectrum allows for discerning different variables.

Scientists, researchers, land managers, decision makers, and others use remote sensing data in numerous ways. Satellite imagery, coupled with ground-based data, aids in our understanding of species distribution, biodiversity, ecosystem services, conservation, and much more. NASA Earth science observations are transforming our approach to some of these critical issues. For examples of how people have used the data, visit the Land Processes Distributed Active Archive Center (LP DAAC) Data in Action, or read our Biodiversity Feature Articles, which includes related Data User Profiles.

Ecosystems respond to changes in land use and climate with changes in species abundance and distribution, as well as altered ecosystem services, such as nutrient recycling and water storage. Understanding potential changes and how they might impact ecosystems provides the ability to detect the negative and often detrimental effects of drought, invasive species, reduced biodiversity, fire susceptibility, disease vectors, and other changes. Increasing knowledge of how ecosystems change under current conditions also helps us to model ecosystem and habitat changes under different climate scenarios.

“Conservation biologists rely on estimates of species richness (i.e., the number of species in a particular place) as they race to determine areas in which to spend limited resources in an age of rapid biodiversity decline. Scientifically sound environmental management requires frequent and spatially detailed assessments of species numbers and distributions. Such information can be prohibitively expensive to collect directly. Measuring the distribution and status of biodiversity remotely, with airborne or satellite sensors, would seem an ideal way to gather these crucial data” (Turner, et al, 2003).

Case Studies

Many ecological questions are answered using remote sensing and ground-based data. NASA-funded projects within each of the four sections of this data pathfinder provide more details on how NASA data are contributing to ecological research.

Vegetation characteristics and processes
Direct detection of biodiversity

Researchers have used very high resolution satellite imagery to directly detect animal populations:

Human impacts

Researchers are using the joint NASA/NOAA Suomi National Polar-orbiting Partnership (Suomi NPP) satellite's Visible Infrared Imaging Radiometer Suite (VIIRS) day/night band to detect biological activities or changes in behavior due to artificial light around urban environments.

Indirect detection of biodiversity
Tools for Data Access and Visualization

Earthdata Search | Panoply | Giovanni | Worldview | AppEEARS | Soil Moisture Visualizer | MODIS/VIIRS Subsetting Tools Suite

Earthdata Search

Earthdata Search is NASA's EOSDIS tool for searching and discovering data in the EOSDIS collection as well as U.S and international agencies across the Earth science disciplines.

Users (including those without specific knowledge of the data) can search for and read about data collections, search for data files by date and spatial area, preview browse images, and download or submit requests for data files, with customization for select data collections.

Image

In the project area, for some datasets, users can customize granules. Users can reformat the data and output as HDF, NetCDF, ASCII, KML, or a GeoTIFF and can choose from a variety of projection options. Data can be subset to obtain only the bands that are needed.

Image

Panoply

HDF and NetCDF files can be viewed in Panoply, a cross-platform application that plots geo-referenced and other arrays. Panoply offers additional functionality, such as slicing and plotting arrays, combining arrays, and exporting plots and animations.

Giovanni

Giovanni is an online environment for the display and analysis of geophysical parameters. There are many options for analysis. The following are the more popular ones:

  • Time-averaged maps are a simple way to observe the variability of data values over a region of interest.
  • Map animations are a means to observe spatial patterns and detect unusual events over time.
  • Area-averaged time series are used to display the value of a data variable that has been averaged from all the data values acquired for a selected region for each time step.
  • Histogram plots are used to display the distribution of values of a data variable in a selected region and time interval.

For more detailed tutorials:

Worldview

NASA's Worldview visualization application visualization application provides the capability to interactively browse over 1000 global, full-resolution satellite imagery layers and then download the underlying data. Many of the available imagery layers are updated within three hours of observation, essentially showing Earth as it looks "right now." This supports time-critical application areas such as wildfire management, air quality measurements, and flood monitoring. Imagery in Worldview is provided by NASA's Global Imagery Browse Services (GIBS). Worldview also includes nine geostationary imagery layers from GOES-East, GOES-West, and Himawari-8 available at ten minute increments for the last 30 days. These layers include Red Visible, which can be used for analyzing daytime clouds, fog, insolation, and winds; Clean Infrared, which provides cloud top temperature and information about precipitation; and Air Mass RGB, which enables visualization of specific air mass types (e.g., dry air, moist air, etc.). These full disk hemispheric views allow for almost real-time viewing of changes occurring around most of the world.

Image

AppEEARS

AppEEARS at LP DAAC offers a simple and efficient way to access and transform geospatial data from a variety of federal data archives. AppEEARS enables users to subset geospatial datasets using spatial, temporal, and band/layer parameters. Two types of sample requests are available: point samples for geographic coordinates and area samples for spatial areas via vector polygons.

Performing Area Extractions

After requesting an area extraction, users are taken to the Extract Area Sample page where they specify a series of parameters that are used to extract data for the areas of interest.

Spatial Subsetting

Define the region of interest in one of three ways:

  • Upload a vector polygon file in shapefile format (a single file with multiple features or multipart single features can be uploaded). The .shp, .shx, .dbf, or .prj files must be zipped into a file folder to upload.
  • Upload a vector polygon file in GeoJSON format (users can upload a single file with multiple features or multipart single features).
  • Draw a polygon on the map by clicking on the Bounding box or Polygon icons (single feature only).

Select the date range for the time period of interest.

Specify the range of dates for which data are desired for extraction by entering a start and end date (MM-DD-YYYY) or by clicking on the Calendar icon and selecting dates a start and end date in the calendar.

Adding Data Layers

Enter the product short name (e.g., MOD09A1, ECO3ETPTJPL), keywords from the product long name, a spatial resolution, a temporal extent, or a temporal resolution into the search bar. A list of available products matching the query will be generated. Select the layer(s) of interest to add to the Selected layers list. Layers from multiple products can be added to a single request. Be sure to read the list of available products available through AppEEARS.

Image

Selecting Output Options

Two output file formats are available:

  • GeoTIFF
  • NetCDF4

If GeoTIFF is selected, one GeoTIFF will be created for each feature in the input vector polygon file for each layer by observation. If NetCDF4 is selected, outputs will be grouped into .nc files by product and by feature.

Image

Interacting with Results

From the Explore Requests page, click the View icon to view and interact with results. This will take users to the View Area Sample page.

The Layer Stats plot provides time series boxplots for all of the sample data for a given feature, data layer, and observation. Each input feature is renamed with a unique AppEEARS ID (AID). If the feature contains attribute table information, users can view the feature attribute table data by clicking on the Information icon to the right of the Feature dropdown. To view statistics from different features or layers, select a different aid from the Feature dropdown and/or a different layer of interest from the Layer dropdown.

Image

Please see the AppEEARS documentation to learn more about downloading the output as GeoTIFF or NetCDF4 files.

Soil Moisture Visualizer

ORNL DAAC developed a Soil Moisture Visualizer tool (read about it at Soil Moisture Data Sets Become Fertile Ground for Applications) that integrates a variety of different soil moisture datasets over North America. The visualization tool incorporates in-situ, airborne, and remote sensing data into one easy-to-use platform. This integration helps to validate and calibrate the data and provides spatial and temporal data continuity. It also facilitates exploratory analysis and data discovery for different groups of users. The Soil Moisture Visualizer offers the capability to geographically subset and download time series data in .csv format. For more information on the available datasets and use of the visualizer, view the Soil Moisture Visualizer Guide.

To use the visualizer, select a dataset of interest under Data. Depending on the dataset chosen, the visualizer provides the included latitude/longitude or an actual site location name and relative time frames of data collection. Upon selecting a parameter, the tool displays a time series with available datasets. All measurements are volumetric soil moisture. Surface soil moisture is the daily average of measurements at 0-5 cm depth and root zone soil moisture (RZSM) is the daily average of measurements at 0-100 cm depth. The visualizer also provides data sources for download.

Image
The Soil Moisture Visualizer allows users to compare soil moisture measurements from multiple sources at the same location. In this screenshot, Level 4 Root Zone Soil Moisture (L4 RZSM) data acquired by NASA’s Soil Moisture Active Passive (SMAP) satellite are shown with data from in situ sensors across the 9-kilometer Equal-Area Scalable Earth (EASE) grid cell encompassing the Tonzi Ranch Fluxnet site in the Sierra Nevada foothills of California, USA. Daily precipitation values for the site (purple spikes) are also provided for reference. Image: NASA ORNL DAAC.

MODIS/VIIRS Subsetting Tools Suite

ORNL DAAC also has several tools for subsetting data from the MODIS and VIIRS instruments:

  • With the Global Subset Tool, users can request a subset for any location on Earth that are as GeoTiff and in text format, including interactive time-series plots and more. Users specify a site by entering the site's geographic coordinates and the area surrounding that site, from one pixel up to 201 x 201 km. From the available datasets, users can specify a date and then select from MODIS Sinusoidal Projection or Geographic Lat/Long. You will need to register for an Earthdata Login to request data.
  • With the Fixed Sites Subsets Tool, users can download pre-processed subsets for more than 3,000 field and flux tower sites for validation of models and remote sensing products. The goal of the Fixed Sites Subsets Tool is to prepare summaries of selected data products for the community to characterize field sites. It includes sites from networks such as National Ecological Observatory Network, Forest Global Earth Observatory network, Phenology Camera network, and Long Term Ecological Research Network.
  • With the Web Service, users can retrieve subset data (in real-time) for any location, time period, and area programmatically using a REST web service. Web service client and libraries are available in multiple programming languages, allowing integration of subsets into a workflow.
Image

Top image: The Global Subsets Tool enables users to download available products for any location on Earth. Bottom image: The Fixed Sites Subsets Tool provides spatial subsets for established field sites for site characterization and validation of models and remote sensing products. Image: NASA ORNL DAAC.

Back to Top

Other Resources

NASA Resources

NASA’s Applied Sciences Biological Diversity and Ecological Forecasting Program supports basic research that advances the understanding of how and why biological diversity is changing. NASA's Applied Remote Sensing Training Program (ARSET) also provides a number of webinars on land management and conservation. Webinars are conducted in a several different languages.

NASA’s Terrestrial Ecology Program researches Earth's carbon cycle and ecosystems using space-based observations. The focus is on land-based ecosystems, changes in their structure and functioning, and their roles in supporting human life and maintaining Earth's habitability.

Image
Image credit: Soundscapes to Landscapes.

Soundscapes to Landscapes is a project of NASA's Earth Science Data Systems (ESDS) Citizen Science for Earth Systems Program (CSESP), which combines bioacoustic data collected by citizen scientists with satellite and environmental data to monitor bird diversity in Sonoma County, California.

Floating Forests is another CSESP project that trains citizen scientists to trace patches of kelp on Landsat imagery. So far, more than 20 years of imagery has been processed. The results are helping to uncover the history of giant kelp forests around the globe and the environmental factors that affect them.

COral Reef Airborne Laboratory (CORAL) is a mission to determine the relationship between coral reef condition and biogeophysical forcing parameters.

The Oceanographic In-situ data Interoperability Project (OIIP) is a collaboration among JPL, UCAR/Unidata, and the Large Pelagics Research Center (LPRC) at the University of Massachusetts, Boston. The goal of the project is to address interoperability and data challenges associated with the integration of oceanographic in-situ datasets and satellite Earth observations using field campaign measurements and marine animal electronic tagging data as test cases.

WhaleWatch is a NASA-funded project coordinated by NOAA Fisheries' West Coast Region to help reduce human impacts on whales by providing near real-time information on where whales have been observed and where they might be most at risk from threats such as ship strikes, entanglements, and loud underwater sounds.

External Resources

Landfire, or the Landscape Fire and Resource Management Planning Tools, is a shared program between the wildland fire management programs of the U.S. Forest Service and U.S. Department of the Interior, providing landscape-scale geospatial products that describe vegetation, wildland fuel, and fire regimes across the United States and its territories.

Global Forest Watch provides data and tools for monitoring forests, specifically tree loss and gain, and biodiversity hotspots.

The United Nations Biodiversity Lab is an online platform that allows policymakers and other partners to access global data layers, upload and manipulate their own datasets, and query multiple datasets to provide key information on the Aichi Biodiversity Targets and nature-based Sustainable Development Goals. The core mission of the U.N. Biodiversity Lab is three-fold: to build spatial literacy to enable better decisions, to use spatial data as a vehicle for improved transparency and accountability, and to apply insights from spatial data across sectors to deliver on the Convention on Biological Diversity and the 2030 Agenda for Sustainable Development. The Applied Remote Sensing Training Program (ARSET) also has an introductory webinar, Using the U.N. Biodiversity Lab to Support National Conservation and Sustainable Development Goals, for additional information on using the U.N. Biodiversity Lab.

Trends.Earth provides maps that monitor land degradation as it applies to Sustainable Development Goal (SDG) 15.3.1. SDG target 15.3 states: “By 2030, combat desertification, restore degraded land and soil, including land affected by desertification, drought and floods, and strive to achieve a land degradation-neutral world.”

Image
WhaleWatch uses satellite data to predict where blue whales might be migrating. (Courtesy of NOAA.)
The Tagging of Pelagic Predators (TOPP) program is an international collaboration that allows users to interact with tracking data and oceanographic datasets to observe marine megafauna, understand factors influencing animal behavior in the ocean, and use sensor data from animal tags to aid in climate models and a better understanding of ocean ecosystems.

Pelagic Habitat Analysis Module (PHAM) is a GIS software tool for fisheries managers, scientists, and researchers to examine and predict pelagic ocean biota habitat; it uses biota presence/absence or abundance data combined with environmental data (satellite imagery, bathymetry, survey cruises, and ocean circulation models).

NOAA TurtleWatch is a map providing up-to-date information about the thermal habitat of loggerhead sea turtles in the Pacific Ocean north of the Hawaiian Islands.

Benefits and Limitations of Remote Sensing Data

When deciding to use remote sensing data, it is important to consider both the benefits and the limitations of the data.

Benefits of using satellite data include:

  • Supplementing ground-based data: ground-based data are more comprehensive on a local scale, providing direct observations of ecological phenomena. However, airborne or satellite data are far more extensive, with millions of measurements over regional and global scales, providing more complete spatial coverage.
  • Temporal resolution: the temporal resolution of satellite data ranges from hours to weeks. Many satellites pass over the same spot on Earth every one-two days and sometimes as seldom as every 16+ days. Data have been collected over increasingly long periods of time, from the 1970s to the present, whereas many ground-based biodiversity studies often use data sampled at a single point in time.
  • Monitoring in near-real time: some satellite information is available 3-5 hours after observation, allowing for a faster response than ground-based observations.

Limitations specific to using satellite data in ecological assessments:

  • Spatial resolution: while lower resolution data provide a more global view, as with Aqua/Terra MODIS measurements, the spatial resolution is too coarse for certain assessments. Most satellite-based data are not at a fine enough resolution to distinguish individual organisms and their movements; for example, using most satellite-based data, scientists can determine the presence/absence of an algal bloom, yet the particular species of algae cannot be determined. This is not the case for instruments at higher resolutions, like those on Landsat or from airborne missions.
  • Spectral resolution: passive instruments (those that use the energy being reflected or emitted from Earth for measurements) are not able to penetrate cloud or vegetation cover, which can lead to data gaps or a decrease in data utility. This is not the case when using data from active instruments like microwave sensors.

A limitation with ground-based data:

  • Species occurrence: data are in analog format only; important specimens remain unidentified; not all records have been assigned geographic coordinates; data records include errors and inconsistencies; and data are not openly shared. Spatial distribution and re-visits are also very limited.

It is not possible to combine all desirable features into one remote sensor; to acquire observations with high spatial resolution (like Landsat) a narrower swath is required, which in turn requires more time between observations of a given area, resulting in a lower temporal resolution. Researchers have to make trade-offs. Finding a sensor with the spatio-temporal resolution capable of addressing your research, application, or decision making process needs is a crucial first step to getting started with using remote sensing data.

Find the Data

Vegetation condition, vegetation types, canopy height, vertical structure of forests, and more.
Direct detection of species presence, species distributions and abundances, prevalence of invasive species, and aquacultural expansions.
Habitat fragmentation due to agriculture, deforestation, urbanization, and other land cover changes; effects of nighttime lights on predator/prey interactions.
Indirect detection of species distribution based on correlative models using in-situ species presence/absence data and remotely sensed climatological or geological variables.
Last Updated
Jul 15, 2021